Fd

2022-11-15 | Categories genes  | Tags root  leaf  nitrate 

• Information
  • Symbol: Fd
  • MSU: LOC_Os05g37140
  • RAPdb: Os05g0443500
• PSP score
  • LOC_Os05g37140.1: 0.0148
  • LOC_Os05g37140.2: 0.0148
• PLAAC score
  • LOC_Os05g37140.1: 0
  • LOC_Os05g37140.2: 0
• pLDDT score
  • 84.97
• Protein Structure from AlphaFold and UniProt
  • 
• Publication
  • Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium, 1998, Plant Science.
• Genbank accession number
  • D30794
• Key message
  • The root Fd cDNA clone (pFDRR) was 603 bp long which contained 261-bp 5’ region encoding the C-terminal 72 amino acid residues and 342-bp 3’ noncoding region
  • The root Fd gene contained 1091-bp 5’ upstream, 444-bp coding and 294-bp 3’ noncoding regions
  • Homology between the rice root and leaf Fds showed 60%, while the former protein shared much higher identity with other nonphotosynthetic Fds (66~88%)
  • Expression of the root Fd gene was induced in response to nitrate and ammonium
  • Southern blot analysis using pFDRR and the rice leaf Fd cDNA (pFDRL) as a DNA probe identified their corresponding genomic Fd DNA
• Connection

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