SRWD1

2024-02-16 | Categories genes  | Tags salt stress  salt 

• Information
  • Symbol: SRWD1
  • MSU: LOC_Os08g38880
  • RAPdb: Os08g0497600
• PSP score
  • LOC_Os08g38880.2: 0.0181
  • LOC_Os08g38880.1: 0.0181
  • LOC_Os08g38880.4: 0.0246
  • LOC_Os08g38880.5: 0.0246
  • LOC_Os08g38880.3: 0.1492
  • LOC_Os08g38880.6: 0.0194
• PLAAC score
  • LOC_Os08g38880.2: 0
  • LOC_Os08g38880.1: 0
  • LOC_Os08g38880.4: 0
  • LOC_Os08g38880.5: 0
  • LOC_Os08g38880.3: 0
  • LOC_Os08g38880.6: 0
• pLDDT score
  • 90.07
• Protein Structure from AlphaFold and UniProt
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• MolPhase score
  • LOC_Os08g38880.1: 0.35229212
  • LOC_Os08g38880.2: 0.41926017
  • LOC_Os08g38880.3: 0.29502454
  • LOC_Os08g38880.4: 0.01094631
  • LOC_Os08g38880.5: 0.01094631
  • LOC_Os08g38880.6: 0.00445893
• MolPhase Result
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• Publication
  • SRWD: a novel WD40 protein subfamily regulated by salt stress in rice OryzasativaL., 2008, Gene.
• Genbank accession number
  • AK112033
• Key message
  • By analysis with microarray data, we found that a gene encoding a novel protein containing five WD40 repeats, was regulated by salt stress in rice and named as SRWD1 (Salt responsive WD40 protein 1)
  • Further, we found that SRWD1 was regulated with different patterns by salt stress in two rice cultivars responding differently to salt stress
• Connection
  • SRWD1, SRWD2, SRWD: a novel WD40 protein subfamily regulated by salt stress in rice OryzasativaL., By database searching, additional four SRWD1-like genes (SRWD2-SRWD5) were found in rice genome, and these five SRWD genes formed a novel WD40 subfamily
  • SRWD1, SRWD5, SRWD: a novel WD40 protein subfamily regulated by salt stress in rice OryzasativaL., By database searching, additional four SRWD1-like genes (SRWD2-SRWD5) were found in rice genome, and these five SRWD genes formed a novel WD40 subfamily

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